Lebanon’s Very Own Star of Science: Send 4 to 1084 and REPEAT!

Living in a country where Star Academy actually still exists, and where stupid people, with useless aspirations and pathetic rewards of signing one CD with Arab labels, pollute the airwaves, one of the countries of the Gulf we mock for being stupid, is holding a brilliant “Stars of Science” competition series.

One Lebanese participant, the only Lebanese one for that matter, has made it to the Qatar Foundation-funded competition’s final four.

Hind Hobeika is a 22-year-old AUB Mechanical Engineering graduate who has designed and engineered swimming goggles that monitor a swimmer’s heart rate. Hind, a passionate swimmer herself, noticed that no device existed to help swimmers monitor their heart rates, for a better work out, and of course their safety.

Here’s a YouTube of Hind and other experts explaining more:

I was surprised to hear about this from none other than Hind’s younger sister, and my good friend Youmna Hobeika. If it were some brainless, vain show of tweens singing, and a Lebanese person made it to the finalists, we would go crazy and create mobs and conspiracy theories about Saudi dialing-slaves who will beat us at sending SMSes. But science? Brains? Something useful? Something that would make the world better? We shy away… Shame!

Hind’s device is ingenious, it is original and it has filled a huge gap in the sports and fitness world with a sleek looking pair of goggles I’d love to try on some day when it hits the shelves worldwide.

So, let’s help our fellow Lebanese candidate and AUBite get the recognition she deserves, and send 4 to 1084 from your Lebanese mobile phone. You can vote as many times as you want, and voting ends Sunday! So, hurry up! Send 4 to 1084 as soon as you read this.

For numbers from other countries, go to www.starsofscience.com

Here’s another YouTube for my engineer-readers, explaining more about the engineering aspect

 

 

 

Lebanese Hunters: Destroying the Food Chain

For those of you who heard of the Lebanese potato catastrophe, you are well-informed (or like me, had to buy some for scouts and realized they were a bit too expensive). For those of you who didn’t, we have someone to blame: hunters.

After being directed towards the problem by AUB’s Post Herbarium Curator, Professor Nada Sinno, I realized the renowned botanist had a point that put things in perspective and shed light upon the destructive consequences over-hunting can have on our environment, society and economy.

When you read that a certain crop has been destroyed or ruined, you immediately think of some plant virus or lethal fungus or maybe even some species of insect. In fact, this is usually the case, with microorganisms and other simple lifeforms being the main culprit behind mass crop failure.

A few months ago though, in the Bekaa fields of Lebanon, a far more complex and cheeky organism was responsible for wreaking havoc on our food supplies and the local economy… A rat.

Rats usually are a simple problem. You might have one running around in one of your storage rooms, get a tube of rat poison, or your rat-loving concierge, and problem solved. Rats were never really a business-threatening, economy-destabilizing agent, until now…

As we always do, Lebanese people, and people in general, tend to overlook the services nature provides for us and the importance of a little thing we like to call biodiversity. Biodiversity is obviously the diversity of a given ecosystem. This diversity is important for countless reasons, we will only discuss the simpler ones, such as the much-talked about, but often not truly understood, food chain.

A food chain is basically a series of species that predates the one below it on the “chain.” The lowest are of course plants, which are eaten by herbivores, which are eaten by carnivores that are in turn eaten by second-degree carnivores. This is a somewhat simplified chain, but most food chains have a similar distribution and include other organism categories based on diets, such as omnivores (carnivorous and herbivorous) and insectivores.

In the above simple schematic, you notice that ultimately, the food chain is not actually a chain, but more of a cycle. Even though we or other mammals and reptiles might be at the top of the food chain, we ourselves die and decompose into the soil. The components that once formed us will become nutrients for the plants that will grow where we have died.

Now, to understand where the hunter comes in, you need only think of which component in the food cycle would a hunter be proud of killing? Obviously, the fox. There is no ‘skill’ involved in killing a rat or breaking a plant. The fox can be easily interchanged with other medium-sized predators, such as maybe wolves but most importantly birds of prey.

Lebanon is lucky to have a few native species of falcons and eagle. “Beshe2″ “Nisr” “Sakr” are all familiar names our friends who hunt boast about killing. This is horrible for several reasons. The first of which is the obvious cruelty to animals for no real return. The birds of prey we shoot down are usually not edible, and even if they are, they are not an essential food source like chickens or cows for example. These already scarce animals are hunted down for pure pleasure…

The second reason why their hunting down is bad is overhunting. You usually would not be satisfied by one kill. We’ve all seen the dozens and even hundreds of birds killed in one hunting trip. The amount we kill is much higher than what the natural propagation of birds is. This is especially true for larger birds, which often lay less eggs and take more time to breed. Killing 2 or 3 “nisr” or “sakr” (eagles or falcons) will spell doom for a certain population, or even species.

How this correlates to the potato incident now becomes clear. The main prey of these large birds are small rodents and snakes. With less or no birds to keep the number of rats in check, the notoriously promiscuous rats will breed and proliferate exponentially.

Less Birds -> More Rats -> Less Potatoes

So, stop killing birds and if you insist on being a hunter, make sure you understand the ethics and laws that make hunting a healthy option, not a means of harming our environment and in turn our economy…

 

Example of what NOT to kill

 

Another example in Lebanon

 

 

 

 

 

 

 

Misplaced Environmentalism

The environment has been a central issue in my daily life and activism career. Politics and other traditional Lebanese activism issues seem not only less important, but petty when compared to the dangers that face our environment and biodiversity.

Which brings me to a central issue many activists and most lay people are not aware of, or at least not enough. Biodiversity is a very valuable characteristic generously bestowed upon us by millennia of natural selection. Rumor amongst cancer researchers has it that the immense biodiversity of life in the Amazon Rain Forest should provide enough combinations to include ones that can fight or prevent most human cancers. I’d like to be that optimistic, but even if that isn’t entirely true, it highlights the fact that many of the answers we seek lie already hidden in Nature. We are decimating that biodiversity at a depressing rate… Unfortunately, the stupendous efforts of environmentalists does not really help preserve this unfathomable treasure…

Let us take a minute to consider the most famous environmentalist campaign in history: Save the Whales movement. I love whales, I love dolphins, I love tigers and every other animal on Earth. I feel more compassionate towards animals than people, and campaigns that aim to save the tigers, dolphins, sea turtles, polar bears and so many other endangered animals have been a priority, and continue to be.

Unfortunately, delving deeper into the science of life, one begins to realize that in reality if whales or tigers disappear off the face of the Earth, it wouldn’t impact our biodiversity much. It also becomes clear that no irreplaceable service is done by those animals we love and cherish so much. I still absolutely love them and will keep fighting to save them, for I cannot immagine a world without polar bears and pandas or an ocean without dolphins and whales, animals that have saved our lives and inspired us ever since we became conscious of how special we are.

However, we must face the facts sooner or later. The organisms we need most are located in the incredibly diverse realms of creepy crawlies and microorganisms. An obvious reason would be that these organisms are many million times as numerous as us higher living things, much more versatile and incredibly diverse. Apart from being a tresure trove of biodiversity, these living things provide us with vital services and products that we cannot possibly live without.

Phytoplankton

Phytoplankton account for 50% of the total photosynthetic activity on Earth. Photosynthesis is the production of sugar (glucose) and oxygen from carbon dioxide and water. In other words, these tiny organisms account for half of the total oxygen available for us to breathe and filter the CO2 from our atmosphere. You probably didn’t know that, and  no one can be blamed, after all, no one organizes sit-ins to protect phytoplankton, or an International Phytoplankton Day.

This has been a troubling issue for me for a while, but the general environmentalist movement never seemed to address this head-on, so this concern took a back seat in my mind until… A recent comment by my Ecology Professor at AUB, Riyad Sadek, made me realize that other people have tuned into this worrying phenomenon in modern eco-friendly activism (yes, I’m that full of myself and thought I knew better than everyone else =P)

He might have been a bit harsh on environmentalists, who risk their lives and safety every day in order to protect animals and plants that cannot fend for themselves, but he had a point. Personally, I believe it is essential we keep and enforce our current efforts to protect iconic animals such as the whale, the dolphin, the bear, the tiger, the turtle and the panda. However, I feel we are falling very short of our responsibilities as the most capable animal on Earth.

The passion, resources, science and time we allocate to protect our closest cousins and favorite furry animals should be replicated for the bacteria and other microorganisms we rely on so much. I will not delve into this specific topic, which I already discussed in depth here. But remember, we cannot breathe, eat, or medicate ourselves, much less maintain Earth’s climate and atmosphere without these organisms. It is time to increase the scope of our global operations by including these misunderstood, unknown soldiers of the Biosphere we call home.

Phytoplankton Patches Seen from Space

Caffeine Fix: Simply Feeding an Addiction?

Every class I attend at AUB, 3 or 4 students are carrying a cup of the above. Whenever you go for a visit, you’re offered Turkish coffee, when you wake up, Nescafe, during the day, an espresson maybe. All you people drink a lot of coffee to ‘function’properly. Personally, I hate the stuff and tried drinking coffee only once. Don’t worry though, I too am hooked on caffeine, though my preferred form (unfortunately) comes in red or blue can, or one with a charging bull on it.

Coffee is the second-most traded commodity worldwide. It can be safely considered as the only true universal addiction humanity has. It has many forms, flavors, tastes and modes of intake, form sizzling hot to ice-cold, black to latte, almost everyone drinks coffee, everyday.

What’s funny though, is that the actual effects of caffeine are still largely misunderstood. Studies on the effect of caffeine have so far been too specific and hardly convincing in the comprehensiveness department. However, recent studies are shedding light on how caffeine reacts with our biology, and the results might be disappointing to many of you.

Firstly, let us establish that caffeine is indeed an addictive substance. In fact, it needs no more than 36-hours for our bodies to get hooked on caffeine. It seems silly, but think about it, if it’s not coffee, it’s Coke, or chocolate or some other caffeine-rich food or beverage. So, we develop this addiction fairly fast and pretty early on. Coffee’s whopping 100mg of caffeine/cup (compared to a mere 30mg in Red Bull) enhances our need for caffeine, and develops tolerance for the substance in our systems.

Efforts to totally deny the body caffeine intake have exhibited withdrawal symptoms from simple headaches, to considerable disorientation, inability to focus and nausea. In fact, the body needs approximately 10-12 days to recover from these withdrawal symptoms.

Now let’s take a look at my favorite system in the human body: the nervous system. Our nervous system (the brain, spinal cord, nerves) is made up of cells called neurons. These cells communicate with each other through electrical and chemical impulses that allow us to move, think, eat and just about anything else we consciously and unconsciously do. In order to communicate with each other, these cells need energy. This energy is mainly derived from an energy-rich molecule called Adenosine Triphospate (ATP). ATP is basically the fuel for all our cells. Upon using up ATP, a byproduct is often produced: Adenosine. Adenosine acts as a signal to our neurons to tone it down. This negative-feedback mechanism stops us from overworking ourselves. If I think/move/work too much, I’d be using a lot of ATP, and thus accumulating adenosine in my system, which in turn will hit the brakes on my nervous system.

Now that we’ve discussed the nervous system and adenosine, allow us to compare the molecular structures of adenosine and caffeine.

Molecular Structure of Caffeine
Molecular Structure of Adenosine

As you (hopefully) can see, caffeine is very similar in structure to the adeninyl segment of the adenosine (the green and blue double-ring). Coincidentally, the receptors for adenosine in neurons bind to the molecule in that specific region. Caffeine not only fits well, it fits better than adenosine itself into the adenosine receptors. What’s even weirder, is that caffeine can indeed bind to the receptors, but it does not produce an effect. What this means is that the caffeine is ‘competing’ with adenosine for its neuronal receptors, and winning. Subsequently, the adenosine receptors are occupied with caffeine molecules that do not change its conformation and allow for subsequent ‘toning down’ of the body’s activity.

This means that caffeine is not in itself a stimulant, but an inhibitor of an inhibiting agent: adenosine. In other words, caffeine masks the effects of fatigue and does not allow the body to respond to its initial wear-and-tear prevention mechanism. To go further with this, if you need that extra push from a not-long-enough sleep, caffeine will do the trick. However, caffeine will not boost your energy after a 3-day all-nighter spree, the fatigue will be there, whether the adenosine receptors pick it up or not.

False…

Interesting as this might seem, further studies point to an alarming possibility: that our need for coffee is merely our body avoiding caffeine withdrawal symptoms. If a heavy coffee drinker stops drinking coffee one morning, withdrawal symptoms like drowsiness and headaches quickly appear. These symptoms are relieved after the body has had its formidable 100mg dose of caffeine.

Further evidence to support this claim has surfaced. Coffee-drinkers were put on a caffeine-tablet regiment. In the first 12 days, participants on the actual caffeine tablets outperformed the control group on a sugar pill. The dose of caffeine was gradually increased, and reached an astonishing level of 900mg/day. That’s equal to nine cups of coffee. In a month’s time, the participants on the 900mg caffeine regiment, and the controls on a placebo, produced similar results. This suggests the initial flop in the control group was a result of caffeine withdrawal and not the ‘boost’ caffeine gave the participants ingesting caffeine tablets. It also demonstrates that like any drug, we develop tolerance towards it, and more and more amounts are needed each time to produce a viable impact (or in this case, avoid one).

Bet you didn’t know that about coffee =D

Even Vampires have a caffein addiction

Yes, Chocolate Does KILL Your Dog – Doggy Health Tips

Dogs are my favorite kind of creature, even better than humans. If you read my blog regularly, you will already know how much I love these animals and care for them. That’s why, this is a post that will give those of you who live with dogs a few pointers about how to take care of them best.

First and foremost, let us address the much-debated legend that dogs will die from chocolate. There’s nothing to debate people, chocolate is indeed very harmful to your dog.

Chocolate contains a compound called Theobromine. Theobromine has effects very similar to that of caffeine. In humans, the average amount present in a chocolate bar has minimal effects, but in dogs, it’s a different story.

To get an idea about what Theobromine does to your body, it is used medically as a vasodilator (it dilates the blood vessels), is administered to help in urination and is also used as a stimulant for the heart.

DON'T give a dog ANY piece of chocolate, even if the puppy-eye look comes on

If your dog ingests enough chocolate with Theobromine, at first, your dog will vomit, urinate, and have diarrhea. When more Theobromine is absorbed, your dog will have seizures, irregular heart-rate and will ultimately die or end up in a coma. In other word, yes, dogs really, really, really, really love chocolate, but the stuff is as many times really dangerous and toxic. So please, be careful and don’t leave chocolate and chocolate-containing pastry unattended.

If you’d like to pamper your dog though, there are special kinds of chocolate treats that do not contain the Theobromine found naturally in Cocoa plants. I used them to help train Titan, my 6-year-old cocker spaniel.

Titan <3

As for dogs eating sugar, this is often mistaken that chocolate is bad because it has sugar, which is toxic cause, as I once overheard “dogs don’t have a pancreas”. Well, they do have a pancreas, and sugar in moderate amounts is not strictly-speaking lethal, but it seriously damages your dog’s teeth. So, avoid giving your dog any food with sugar.

To help take care of his/her teeth, get them a big, healthy bone (either a real bone, or a synthetic one fortified with vitamins and minerals) so they can not only have fun with it, but also clean their teeth and maintain a cavity-free enamel. Avoid chicken bones though, they tend to shatter and form very sharp shards of bone that can damage your dog’s stomach or esophagus. Also, when you give them a bath, use an old toothbrush and brush the canines =D

That’s it for now, take care of your dogs everyone!

Botox: Beauty in a Vial, and a New Bioweapon

A photomicrograph of Clostridium botulinum bac...

Clostridium botulinum

Clostridium botulinum is a strain of bacteria that produce probably the most potent toxin known to man. Just so you get an idea of how lethal this neurotoxin is, a speck of botulinum toxin can easily kill a healthy adult. Legend among biologists has it that a big teaspoon of the toxin’s purest form in enough to kill-off the entier human race.

Most of us however think of cosmetic surgery when the trade name “Botox” comes up. Botox though, even in the cosmetic surgery field, tends to mislead us. Unnaturally huge lips and breasts are not botox. They’re silicon implants. Botox is what you inject into, most commonly, your forehead area to remove wrinkles. The toxin paralyzes the local musculature, relaxing them and thus removing any wrinkles.

Botox Injection

On this note, botox wasn’t always used for cosmetic purposes. It was originally used in procedures to correct strabismus (Cross-eye) and facial tics. Now though, it’s the Holy Grail of the beauty industry.

Unfortunately, like any multi-billion dollar industry, the black market quickly caught on and hundreds if not thousands of counterfeit botox factories are churning away, producing tons of lethal toxin every year.

The counterfeiters are clever though… All their transactions occur online, with fake production addresses and only a credit card and shipping address needed to order as much counterfeit botox as you’re willing to pay for.

What’s the big deal if men and women seeking to look younger save a few hundred dollars per vial? Well, terrorist groups like Al Qaeda have been trying to produce some of the toxin since 2001, but rudimentary lap equipment and personnel ineptitude have so far not yielded any viable toxin. Recently though, with these factories popping up all over the world, terrorist groups can simply order botulinum toxin online…

For now, you need about hundreds of vials of botox to be able to kill a person. The pure form is an entirely different story, and these counterfeit factories can definitely cultivate the bacterium and produce the pure, undiluted toxin. In fact, a Master’s degree in Biology and an adequate lab is enough to produce this toxin. So, our water and food supplies are at risk of contamination by the deadly poison and there’s not enough being done…

Conventional Warfare

Biological weapons are practically unheard of in our day. Most countries have virtually abandoned their bioweapons programs. Don’t be fooled by this optimistic fact though, because the only reason they did abandon this devastating form of weapon is because they realized they could not control it to a safe enough extent, so as not to backfire on their own troops. Also, Clostridium botulinum and their toxin are not very heat-resistant, making them useless if mounted on conventional weapons such as missiles and bombs (which the US and the former USSR have already experimented with and proven unproductive)

Guerilla Warfare

Terrorism though, and the guerilla-warfare tactics employed by several fundamentalist groups around the world can, and do, resort to unorthodox fighting methods, with poisoning water and food supplies being high on the list of possible attacks. In fact, these plans have been documented in several books confiscated from Al Qaeda in the past decade.

So, we come to this eerily funny dilemma: the big governments of the world giving up on biological weapons, and the surge in demand for cheaper counterfeit cosmetic Botox, have converged to form a horrifying biological threat that makes the Anthrax attacks look like child’s play.

Why did I post this? To show you that the future is in Biologists’ hands, whether for the better or the worse! =D

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Catholic Schools to Student: Stay Stupid

I am a Saint Joseph School Cornet Chehwan alumnus, and I owe both my academic status and social standing today to this fabulous educational institution. If I had the choice to go to school again, it would definitely SJS, and as for my children, if I have any and I’m living in Lebanon, SJS is where they’re going to graduate from.

Today unfortunately, I got a punch in the guts after I remembered a disturbing truth I had forgotten after going to AUB. Evolution was a taboo topic which was included in our books and their curriculums, but never even remotely mentioned, much less covered.

Why? Because of the naive misconception that Evolution will somehow undermine the religious domination of the Catholic Church on the minds of its faithful (or once religious domination). Allow me to begin to destroy this position taken by many Catholic schools.

But before I do, allow me to clarify that institutions of other faiths also scrap Evolution from their curriculums, but I will only address the SJS issue, because it is one I am familiar with and frankly, one that interests me.

First and foremost, if you disagree with the principle (and not theory) of Natural Selection, you sir/m’am have the IQ of the monkeys you are so afraid of. For those of you who parade around that Evolution is a theory and not a law like in Physics, it is because Evolution is an ongoing process, and one so complex that one unifying law is very impractical and will always baffle our human minds. Please  note though, it will baffle us not because it is divine or unattainable, but because the numbers and time periods are astronomical, making it hard for me and you to successfully integrate the idea of gradual change through natural selection over many thousands of generations. So, that doesn’t mean Evolution has not been successfully and beyond doubt verified in the various fields and branches of science concerned with it: from geology, to biochemistry, genetics and simple, elegant logic and reason.

Now that the vocabulary is out of the way, I will bypass explaining how and why Evolution is a given fact that defines many aspects of life and not only its origins and shaping, but also its unfolding in our present day and its effect on who we are and why we do what we do (if it still didn’t stick, I’ve written many posts on this topic, which I hope will help). That aside, let us consider the Chruch’s position, and, to avoid being accused of putting words into His Holiness Pope John Paul II’s mouth, I will provide you with a link that illustrates the late Pontiff was not so narrow-minded. Go here and read for yourself.

So, why are we deliberately keeping information so vital, so beautiful from younger generations? Why are their minds numbed to the age-old stimulating debate of reason (Evolution) and blind naivety (Creationism)? Till when will our schools ignore one of Science’s greatest principles?

Religion: Naturally Selected?

In the healthy debate that goes on between those in favor or Creation, and those who understand that Creation is simply funny, I often make my day by reading an article or reply by renowned (mostly American) Creationists.

Life and the Universe are governed by humanly incomprehensible figures and probabilities. The magnitude of these numbers, such as the number of stars in a galaxy and the number of galaxies in the universe, or the number of combinations made possible through DNA replication and mutation, are inappreciable by our brains, whose short-term-memory (or working memory) capacity is limited to a mere 4 (plus or minus 1) distinct objects, persons, or categories.

But being a Biologist, one becomes familiar with the elegantly simple, almost-complete explanation of life’s complexity and adeptness: Natural Selection. Biologists, more than any other type of scientist, have a heightened sense of awareness about life’s current state and how the two options are not chance or intelligent design, but in fact, owe their defiance of extreme improbability to Evolution.

In this latest edition of my series presenting the case against Creation (or more accurately, in favor of natural selection) I will handle our tendency to assign everything an ‘intentional’ agent, or spirit.

All of us, at some point in our daily lives, give our car, computer, or microwave a good scold, or even a beating for ‘doing this to me’ when they fail to perform their respective functions. This automatic assignment of a living, abstract entity, or ‘spirit’ to virtually anything we encounter, seems to be counter-intuitive in natural selection terms. In fact, it is probably one of the precursors that gave rise to religion and rituals in virtually all known human civilizations.

If one considers the set of rituals, ceremonies and traditions so vigorously practiced, protected and imposed by dozens of civilizations throughout history (and before it) an Evolutionist might be stumped as to how this religious trait survived when it actually has no specific biological purpose. In fact, it consumes time, energy, and even lives (whether in sacrifice or war for a certain deity) and thus in no way ensures propagation of an individual’s or a group’s genes, much less its survival.

Therefore, religious practice is probably a by-product of several other evolutionary adaptations that have taken a different path. In this article, I deal with the aforementioned tendency of humans to attribute a ‘soul’ or ‘intention’ to apparently inanimate objects. If one considers why this might have evolved, and become virtually ubiquitous in all humans, the answer becomes very obvious.

There are several paths that can be taken to assess a certain factor’s danger-level to an individual. The most obvious one is the physical one, whereby I can evaluate the size, ferocity, musculature, sharp claws and powerful jaws on a tiger. Unfortunately, by the time I have concluded that the tiger is actually threat, I’d probably be halfway down its digestive system. The natural thing is creating a conceptual short-cut that has to do with design. We are taught, by elders and experience, that all things were ‘designed’ for a certain purpose. In the tiger’s case, it was ‘designed’ to kill humans. Therefore, upon coming face to face with this animal, you directly make the connection of human = snack and flee (or fight) even if the tiger didn’t necessarily indicate it was about to attack.

However, even the false-design-inspired mental shortcut wasn’t enough for our course of natural selection. That’s why we eventually developed a sense that other things have minds too. A sort of crooked theory of mind perception of both animate and inanimate objects. So, upon detecting a stimulus, the associated ‘intention’ or ‘soul’ of it is triggered in our naturally-selected-brains. We feel our Windows 7 is working against us, when in fact it is neutral when it comes to intentions and emotions, it just performs what the code tells it to, whether the code is benign or not. To us though, especially me, I am convinced the Microsoft Operating System is intentionally annoying and frustrating despite it being an inanimate machine (for now at least).

This assigning of intentions to everything around us was probably an evolutionary adaptation that helped save us from predators and dangerous situations. This automatic assignment of consciousness to non-conscious objects and behaviors was not alone though in the formation of human religiosity.

As children, we all needed to assign meaning to things and events, even if it is arbitrary, for everything is there for a reason. For example, clouds are to make rain, rocks are to build houses, cows are to eat. These are all infantile understandings of objects and animals around us. Even though these explanations are not truly accurate, and clouds, rocks, and cows are there because of different causes and results of ages-old processes, assigning these reasons for them existing is comforting, makes sense, and highlights the relationship we have with our surroundings (irrigating crops, building homes, eating in this case).

It was inevitable that a reason for existence itself would be attributed to serving some higher purpose: its Creator. Different religions have explained it in different ways and different gods, but, all deities worshipped are believe to have created our world and have the ability to intervene with it.

Another factor that probably helps religion and its practice become seemingly eternal and virtually ubiquitous, is the human ability (and curse) to espouse beliefs and knowledge from older generations. We rely heavily on our parents and elders to shape our understanding of the world. Everything from language to maths, eating and pooping, are all learned by humans when they are younger, and these acquired skills and facts stick to an individual, as you all (hopefully) know. So, not only will I learn that fire hurts me, or that I might die if I jump off a cliff, but also that I was created by a God and must worship Him. If not by parents, by schools or other socially influential agents.

So, the need for assigning intention and meaning (teleology) to all things around us coupled with indoctrination of religious practices as children, have ensured, through natural selection, that religion become a trait we cannot escape from. Even the most ardent of atheists, understand what God is supposed to be and how He is supposed to function, because it is a universal aspect of our society. If not God, witches or other pagan deities, but, always an illogical, time and energy-consuming, seemingly useless set of practices and traditions that have most probably come as a result of several evolutionarily advantageous traits, misfiring and combining to form the world’s religions.

Please understand we did not handle faith, only religions and religious practices, practices as in the human manifestation of beliefs. This is a commentary on that, and not the existence or relevance of faith or God.

100% Synthetic Life is a Babystep Away

There are moments in our history that have made us rethink where we stand in the Universe, how we perceive ourselves in this almost infinite expanse of mostly unknown things, and how we asses our life and its value.

Men of science such as Copernicus, Galileo, Darwin and Einstein have all presented us with questions and possibilities that changed the way we think in a momentous way. Their revolutionary theories and discoveries have become the laws that govern our understanding of the Universe and ourselves.

Like all science, the questions a scientific answer drags along with it, are far more complex than the original inquiry. Life and its beginning are, by far, the most controversial, most intriguing, most far-fetched and red-taped issue in all of science and philosophy. Many of us believe we will understand how the Universe will come to be, yet very few believe the Origins of Life are accessible to us, that life is far too complex and the idea of life coming from non-living substances, is simply outrageous.

Well, not anymore.

Scientists have successfully synthesized a 1-million base pair, 100% synthetic genome, designed on a computer, and inserted it into a hollowed-out bacterium. The single-cell organism was ‘reactivated’ and it was able to function according to the genome’s instructions, and reproduce this synthetic genetic material, just like a ‘natural’ life form would have.

The fallout of this will be massive, in fact, it has already stirred interest in the United States government, with President Barrack Obama requesting the Presidential Commission for the Study of Bioethical Issues look further into the issue, and provide a comprehensive assessment of this new breakthrough’s implications. The US House Energy and Commerce Committee has also scheduled a hearing next week to discuss both the positive and negative aspects of this monumental leap in bioengineering.

Some will consider this solid evidence that life can be created from simple chemicals under certain conditions. Yet, others are quick to undermine this organism, who’s parent is a computer. Skeptics point out only the genome was synthetic, and that the cellular machinery was provided by the hollowed-out bacterium. In the past couple of years, scientists have successfully assembled ribosomes from a soup of inorganic molecules as well. The fact that genetic material, as well as the machinery to replicate, transcribe and translate it can now be synthesized from a non-living precursor, is proof enough that in a matter of short time, and some heavy funding, the bioengineering of custom-made organisms is a soon-to-be-realized reality.

Time is closely linked to, of course, money. And, fortunately, this project has quite a lot of dollars. In fact, Synthetic Genomics Inc. has a contract with ExxonMobil for as much as half a billion dollars to finance research into creating biofuel-producing algae.

However, such a potent, promising and controversial technology carries as much threats and potential problems with it as it does benefit and progress. This technology could be used to engineer biological weapons and might produce organisms harmful to the environment, causing unforeseeable damage to natural ecosystems. Then again, this technology can be utilized to perfect vaccines and refine medicines, and help fight pollution and conserve what’s left of our environment.

This also begs the question of whether it is ethical to not just manipulate existing organisms, but create totally new ones. For me, I see this as amazing and a moment that will go down in history with the likes of Darwin and Copernicus. The question is, will Craig Venter, the man behind this technology, be given due credit, or will he be persecuted by those who still refuse to put humanity’s ego aside and focus on the facts.

More will be written on this after the House and the Presidential committees have concluded their inquiries into this revolutionary breakthrough.

My Jehova’s Witness Encounter

Right before leaving for class yesterday morning, two very nice women knocked on my door and asked me if I thought that there would be an end to the chaos in the world. I of course said no. Then they got to the expected catch, God. She actually had me though when she mentioned the COP15 Climate Change summit in Copenhagen last December, so, I had to invite them in after getting dressed.

I was in the mood for a stimulating conversation, so, I told them why bother turning to God? The usual “the Bible tells us so” and “the Bible answers everything” answers. Not undermining the Bible’s integrity, but it was written by men 2000 years ago and we do know a tad bit more about most stuff today.

I made my position as an Evolutionist very clear, and sought to explain it to them in terms of simple Biology. I then moved on to more complex and cognitive processes and their evolutionary precursor. In fact, when challenged, I met them with perfectly logical arguments, be it regarding someone’s ‘soul’, emotions, and other traits we consider unique to us (of which my position has been made clear through several previous posts on the blog). In the end, I got them to agree that we differ from primates and other higher-mammals in degree, not kind (when it comes to traits like love, disgust, etc.) A defining turning point in the argument.

The younger woman honestly thought I would read a book, in arabic, explaining to me that Evolution is wrong. Hahahaha, Creationists… I told her, I’d read the book, on one condition. She read 2 books, On the Expression of Emotions in Man and Animals by Charles Darwin and Buy-ology by Martin Lindstrom (one of the greatest scientific minds of all time, and a modern-day layperson, who is a marketing guru with a thirst for knowledge) and be able to tell me what they’re both about.

Next in line, they pulled out the whopper: how did the universe come to be? I admitted we know only about 5% of what the universe is made up of. However, the word ‘yet’ was my parachute. We don’t know yet, and I for one have great hopes for the ‘Big-Bang’ experiment at CERN (Centre Europeen pour la Recherche Nucleaire), which, if successful, will allows us to know a whopping 30% more of our universe. This indicates a celestial stride (literally) in terms of how long it’s going to take to find out 30% extra universe components.

Plus, I unleashed the bigger whopper: Science changes, it’s edited, made better each step of the way.

It was obvious that if I didn’t concede just a little bit, they would resort to their uneasy laughter (again). So, I said, let us suppose that God is beyond space and time, hence, He created the universe and everything in it, but does not interfere with it directly. They said what I was going to conclude with: “Why bother if that’s the case?”

At the end of the day (or 30-minute visit at least), I made 2 women from a very shady and probably misunderstood para-Christian sect, read a book which is the foundation for modern-day free-thought and another which endorses it with modern-day lay-terms.

Science 1, Religious Fundamentalism 0

Mirror Neurons: Autism’s Neurological Basis?

Jane Goodall, The Chimpanzee Lady

Mirror neurons were discovered late in the 80s, and they hinted at the ability to be stimulated not just by performing a certain action, but also by observing someone else do the very same action.

Originally thought to include simple motor actions and goal-oriented tasks, mirror neuron systems (MNS) have been implicated in several other cortical regions and hence, several more complex phenomena like empathy, emotions, theory of mind and maybe even autism.

The act of mimicking someone else is an ability inherent in monkeys and primates starting at a very young age, as you can see below:

I’m sure you’ve all had this experience (at least with someone’s baby if not a macaque monkey =P)

This is a fairly simple task, yet, autistic individuals exhibit difficulty in mimicking others’ facial expressions. The activation needs more time, and involves more brain regions. This probably means that normal individuals rely on the MNS present in the cortical region that control facial expressions, and thus can almost instantaneously comprehend and replicate a certain facial expression.

In individuals with autism spectrum disorder though, different strategies are employed in order to accomplish this fairly simple task. These strategies include utilizing different brain regions, such as visual cortices and learning and memory centers in order to execute a the expression. Imagine having to think about how to smile, or give a disgusted look…

This phenomenon observed in autistic individuals might seem a motor cortex dysfunction to some of you. Well, as a matter of fact, several studies have pointed out that individuals with autism have a normal cortical motor area. In an experiment involving simple finger movements, both the control group and the autistic group expressed similar brain activation when moving the fingers. What is remarkable though, is that in individuals with autism, when observing the finger movements of others, they only registered brain activity when the fingers were pointed towards them. So, the problem here was not motor-cortex activation upon observing others move their thumb and index, but in fact a problem with self-other perception.

Therefore, it is very plausible that the neurons that allow us to understand the states of others can malfunction, and as a result, cause autism. Yet, the question remains, does MSN dysfunction cause autism, or is MNS is a result of autism and abnormal neural development?

The Question of Extra-Terrestrial Life

 

Humans are very arrogant animals. We have always thought of ourselves as superior, as special, as one of a kind and divinely designed, and thus unsurmountable in complexity and purpose. Well, there are certain problems with that notion.

Most obvious of the problems with that attitude is of course the purpose of our existence. What is it exactly? To some, it is a mere phase before an afterlife, others think it is a cycle where we keep manifesting ourselves in different forms through reincarnation… The theories to avoid admitting that humans, like everything else, simply cease to exist, are plentiful, but they are not the subject of this post.

Physics has been exploring the boundaries of our Universe like never before since the beginning of the 20th Century. What was once a geocentric universe theory (Earth was the center of the universe, that was strongly and brutally advocated by the Church), was replaced by a heliocentric theory (the Sun as the center of the universe after overwhelming evidence against the geocentric one). Today, we know our solar system is but a microscopic component of our larger galaxy, which itself is an insignificant part of hundreds of billions of other galaxies.

That was the first blow to humanity’s ego: we are not the center of the universe.

Well, even though we’ve discovered hundreds of billions of star systems, we did not discover any planets or solar systems, at least none which are remotely similar to our Earth. Nope, sorry proud human supremacists, we’ve now identified over 500 Earth-like planets orbiting nearby stars.

The probability that life may exist is 1 over a 1,000,000,000 you might say, well, luckily we have many 100,000,000,000s of galaxies, with 1,000,000,000s of stars each, with an incomprehensibly large number of planets. So, 1 in a billion is in fact a pretty high probability in a Universe like ours.

We’ve established now that within the realms of Mathematics and Physics, there is enough evidence to reasonably consider life does exist beyond our planet’s atmosphere.

The Earth

A Galaxy with Hundreds of Billions of Stars

In This Depiction, Each Speck of Light is a Galaxy

What people often overlook, is that life is not Physics or Mathematics’ turf, but Biology’s.

Before we go into orbit and start wondering about life elsewhere, we should take examples of life here on Earth. We see life as a fragile balance of physical factors that allow organisms to persist and reproduce. So, life can only originate from another living thing, right? So far, science has not been able to fully explain the ‘spontaneous’ emergence of life (by spontaneous I don’t mean fast and miraculous, I mean its beginning from non-living things) However, we are getting closer every year with only a few gaps remaining to fill. In fact, chemists have already successfully recreated conditions similar to Earth’s some 2 billion years ago, where building blocks of cells were successfully assembled (polypeptides) from inorganic elements in super-heated conditions in an electric field.

In other words, life from non-living materials is not so far-fetched after all. As for the delicate status quo in the physical world to allow for life to flourish, we have found organisms that inhabit and flourish in environments that disobey this equilibrium. These ‘extremophiles’ inhabit places that are too hot, too cold, too salty, too acidic, etc. for any other organism to survive. In fact, these conditions are similar to those found on other planets in our very own solar system, and probably in planets farther away.

As you can see, it is very hard for me to put my thoughts on the matter into a coherent manner in such a short post. Stephen Hawking needed a 500+ page book, so, don’t be critical of little old me.

However, as a believer in the possibility of life existing elsewhere in the universe, the explanations and theories are infinite. Maybe they’re way too primitive to make contact. Maybe we’re way too primitive to pick up their signals, or we’re just too insignificant to them (like ants in your garden, you know they exist, you just don’t bother communicating with them, unless you’re ‘special’ in the mind). Maybe they’re not carbon-based organisms like us, or maybe their technology is not silicon-based like ours. Maybe they simply do not exist (which I seriously doubt). Maybe they come and abduct farmers from remote areas of the world (which I find sad to believe, or even consider for a moment, given its obvious cult-like following which generates the affiliated ‘evidence’ and ‘testimonies’ like UFOs and Area 51)

So, don’t believe in little green men with laser rays, nor in flying saucers. Don’t believe in anything. But, wouldn’t you think keeping an open mind regarding the matter of ETs would be wiser than considering us the sole inhabitants of all this universe? Shouldn’t we spare ourselves the shame of our ancestors who thought we could fall off the Earth’s flat surface? Or that the whole Universe revolves around our tiny rock?